BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] (428 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] 799 0.0 gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltran... 544 e-158 gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltr... 532 e-155 gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltra... 336 6e-96 >gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] Length = 428 Score = 799 bits (2064), Expect = 0.0 Identities = 415/428 (96%), Positives = 415/428 (96%) Query: 1 MKRDKVQTLHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVH 60 MKRDKVQTLHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVH Sbjct: 1 MKRDKVQTLHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVH 60 Query: 61 IEQSSSDVVIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRP 120 IEQSSSDVVIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRP Sbjct: 61 IEQSSSDVVIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRP 120 Query: 121 MKRVTEPLKKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEG 180 MKRVTEPLKKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEG Sbjct: 121 MKRVTEPLKKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEG 180 Query: 181 TTTVTEPHKSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAA 240 TTTVTEPHKSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAA Sbjct: 181 TTTVTEPHKSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAA 240 Query: 241 GAMVPNSRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAV 300 GAMVPNSRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAV Sbjct: 241 GAMVPNSRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAV 300 Query: 301 EIGGXXXXXXXXXXXXXALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEP 360 EIGG ALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEP Sbjct: 301 EIGGDIIPRLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEP 360 Query: 361 TADGMKVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEH 420 TADGMKVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEH Sbjct: 361 TADGMKVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEH 420 Query: 421 LNKLSKKS 428 LNKLSKKS Sbjct: 421 LNKLSKKS 428 >gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 432 Score = 544 bits (1401), Expect = e-158 Identities = 274/418 (65%), Positives = 330/418 (78%), Gaps = 1/418 (0%) Query: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 L+G I IPGDKSISHR+VMFG++A G TT+K FL GADCLSTI CF++MGV I Q+ +V Sbjct: 16 LNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKEMGVEITQNGDEV 75 Query: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 + GKG++ L+EP+++LDVGNSGTTIRLM GILA PF+S V GDESIAKRPMKRVT PL Sbjct: 76 TVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESIAKRPMKRVTNPL 135 Query: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 K+MGA IDGR G FTPL++ G LK I+Y+SPVASAQ+KSA+LLAGL+AEG T VTEPH Sbjct: 136 KQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGLRAEGVTAVTEPH 195 Query: 189 KSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSR 248 SRDHTERML AFGVK++ + +V ++GGQKLTA DI VPGD+SSAAFFL AGA++PNS+ Sbjct: 196 ISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSSAAFFLVAGAIIPNSK 255 Query: 249 IVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAVEIGGXXXX 308 ++L+NVG+NPTRTGIIDVL+ MGA I+P + +EP ++ IETSSLK +EIGG Sbjct: 256 LILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIETSSLKGIEIGGDIIP 315 Query: 309 XXXXXXXXXALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGMKVY 368 AL ATQAEG TVI+DA ELKVKETNRIDTVV+EL KLGA IE T DGM +Y Sbjct: 316 RLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTKLGARIEATDDGMIIY 375 Query: 369 GKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLSK 426 GK LKG V+S+GDHRIGMML IA C+ E I IE +A+ VSYPTFF+ L KL+K Sbjct: 376 GKSALKGN-TVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSYPTFFDELQKLAK 432 >gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus halodurans C-125] Length = 431 Score = 532 bits (1371), Expect = e-155 Identities = 273/419 (65%), Positives = 320/419 (76%) Query: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 L G I +PGDKSISHR+VMFGALA GTTTV+ FLPGADCLSTI CF+K+GV IEQ+ V Sbjct: 13 LKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQAEERV 72 Query: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 + GKG D L+EP +LDVGNSGTT RL+LGIL+ PF+S + GDESI KRPMKRVTEPL Sbjct: 73 TVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESIGKRPMKRVTEPL 132 Query: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 K MGA+IDGR G TPLS+ G LKGID+ SPVASAQ+KSA+LLAGL+AEG T+VTEP Sbjct: 133 KSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGLRAEGKTSVTEPA 192 Query: 189 KSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSR 248 K+RDHTERML AFGV + +D +VSI GGQ LT + VPGDISSAAFFL AGAMVP+SR Sbjct: 193 KTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAFFLVAGAMVPHSR 252 Query: 249 IVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAVEIGGXXXX 308 I L NVG+NPTR GI++VL+ MGA L ++ G EP DL IETS L+ VEIGG Sbjct: 253 ITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSVLQGVEIGGDIIP 312 Query: 309 XXXXXXXXXALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGMKVY 368 A+LATQA G TVIKDA ELKVKETNRIDTVVSEL KLGA I T DGM + Sbjct: 313 RLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIE 372 Query: 369 GKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLSKK 427 G LKGG VSSHGDHRIGM + IA+ + E+P+ +E T+AI VSYP+FF+HL++L + Sbjct: 373 GPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPSFFDHLDRLKSE 431 >gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Staphylococcus aureus subsp. aureus MRSA252] Length = 432 Score = 336 bits (861), Expect = 6e-96 Identities = 185/422 (43%), Positives = 261/422 (61%), Gaps = 6/422 (1%) Query: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 L GEI +PGDKS++HR++M +LA G +T+ L G DC T+D FR +GV I++ + Sbjct: 13 LKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRLLGVDIKEDEDKL 72 Query: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 V++ G A K P +L GNSGTT RL+ G+L+G S ++GD SI KRPM RV PL Sbjct: 73 VVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSIGKRPMDRVLRPL 132 Query: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 K M A I+G +TPL + + +KGI+Y VASAQ+KSA+L A L ++ T + E Sbjct: 133 KSMNANIEG-IEDNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASLFSKEATIIKELD 191 Query: 189 KSRDHTERMLSAFGVKLSEDQTSVSI--AGGQKLTAADIFVPGDISSAAFFLAAGAMVPN 246 SR+HTE M F + + + S++ + + AD VPGDISSAAFF+ A + P Sbjct: 192 VSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSAAFFIVAALITPG 251 Query: 247 SRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIE-TSSLKAVEIGGX 305 S + + NVG+NPTR+GIID+++ MG +++ + +GAEP + I+ T L+ ++I G Sbjct: 252 SDVTIHNVGINPTRSGIIDIVEKMGGNIQLF-NQTTGAEPTASIRIQYTPMLQPIKIEGE 310 Query: 306 XXXXXXXXXXXXALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGM 365 ALL TQA GT+ IKDA ELKVKETNRIDT L LG E++PT DG+ Sbjct: 311 LVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLGFELQPTNDGL 370 Query: 366 KVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLS 425 ++ + K A V S DHRIGMML +AS ++ EP++I+ DA++VS+P F L L Sbjct: 371 IIHPSE-FKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPGFLPKLKLLE 429 Query: 426 KK 427 + Sbjct: 430 NE 431 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.314 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3470 Number of Sequences: 7 Number of extensions: 133 Number of successful extensions: 12 Number of sequences better than 1.0e-20: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 428 length of database: 2750 effective HSP length: 45 effective length of query: 383 effective length of database: 2435 effective search space: 932605 effective search space used: 932605 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 212 (86.3 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] (432 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltran... 835 0.0 gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] 573 e-167 gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltr... 557 e-162 gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltra... 353 e-101 >gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 432 Score = 835 bits (2158), Expect = 0.0 Identities = 432/432 (100%), Positives = 432/432 (100%) Query: 1 MKNVKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISC 60 MKNVKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISC Sbjct: 1 MKNVKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISC 60 Query: 61 FKEMGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGD 120 FKEMGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGD Sbjct: 61 FKEMGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGD 120 Query: 121 ESIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILL 180 ESIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILL Sbjct: 121 ESIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILL 180 Query: 181 AGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSS 240 AGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSS Sbjct: 181 AGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSS 240 Query: 241 AAFFLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIE 300 AAFFLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIE Sbjct: 241 AAFFLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIE 300 Query: 301 TSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTK 360 TSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTK Sbjct: 301 TSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTK 360 Query: 361 LGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSY 420 LGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSY Sbjct: 361 LGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSY 420 Query: 421 PTFFDELQKLAK 432 PTFFDELQKLAK Sbjct: 421 PTFFDELQKLAK 432 >gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] Length = 428 Score = 573 bits (1477), Expect = e-167 Identities = 286/418 (68%), Positives = 343/418 (82%), Gaps = 1/418 (0%) Query: 16 LNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKEMGVEITQNGDEV 75 L+G I IPGDKSISHR+VMFG++A G TT+K FL GADCLSTI CF++MGV I Q+ +V Sbjct: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 Query: 76 TVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESIAKRPMKRVTNPL 135 + GKG++ L+EP+++LDVGNSGTTIRLM GILA PF+S V GDESIAKRPMKRVT PL Sbjct: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 Query: 136 KQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGLRAEGVTAVTEPH 195 K+MGA IDGR G FTPL++ G LK I+Y+SPVASAQ+KSA+LLAGL+AEG T VTEPH Sbjct: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 Query: 196 ISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSSAAFFLVAGAIIPNSK 255 SRDHTERML AFGVK++ + +V ++GGQKLTA DI VPGD+SSAAFFL AGA++PNS+ Sbjct: 189 KSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSR 248 Query: 256 LILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIETSSLKGIEIGGDIIP 315 ++L+NVG+NPTRTGIIDVL+ MGA I+P + +EP ++ IETSSLK +EIGGDIIP Sbjct: 249 IVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAVEIGGDIIP 308 Query: 316 RLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTKLGARIEATDDGMIIY 375 RLIDEIP+IAL ATQAEG TVI+DA ELKVKETNRIDTVV+EL KLGA IE T DGM +Y Sbjct: 309 RLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGMKVY 368 Query: 376 GKSALKGN-TVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSYPTFFDELQKLAK 432 GK LKG V+S+GDHRIGMML IA C+ E I IE +A+ VSYPTFF+ L KL+K Sbjct: 369 GKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLSK 426 >gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus halodurans C-125] Length = 431 Score = 557 bits (1436), Expect = e-162 Identities = 282/428 (65%), Positives = 343/428 (80%), Gaps = 1/428 (0%) Query: 4 VKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKE 63 ++ +T+ P GL G I +PGDKSISHRAVMFG++A+G TT++GFL GADCLSTISCF++ Sbjct: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 Query: 64 MGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESI 123 +GV I Q + VTV GKG +GL+EP +LDVGNSGTT RL+ GIL+ PF S + GDESI Sbjct: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 Query: 124 AKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGL 183 KRPMKRVT PLK MGA IDGR+ G TPL+IRGG LK I++ SPVASAQ+KSAILLAGL Sbjct: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 Query: 184 RAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSSAAF 243 RAEG T+VTEP +RDHTERMLEAFGV + ++G TV + GGQ LT + VPGD+SSAAF Sbjct: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAF 240 Query: 244 FLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIETSS 303 FLVAGA++P+S++ L NVG+NPTR GI++VL++MGAT +E EP A++TIETS Sbjct: 241 FLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSV 300 Query: 304 LKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTKLGA 363 L+G+EIGGDIIPRLIDEIP+IA+ ATQA G TVI+DA ELKVKETNRIDTVV+ELTKLGA Sbjct: 301 LQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 360 Query: 364 RIEATDDGMIIYGKSALKGN-TVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSYPT 422 I ATDDGMII G + LKG TV+S+GDHRIGM +AIA LAE + +E EA+ VSYP+ Sbjct: 361 SIHATDDGMIIEGPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPS 420 Query: 423 FFDELQKL 430 FFD L +L Sbjct: 421 FFDHLDRL 428 >gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Staphylococcus aureus subsp. aureus MRSA252] Length = 432 Score = 353 bits (905), Expect = e-101 Identities = 199/430 (46%), Positives = 273/430 (63%), Gaps = 6/430 (1%) Query: 4 VKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKE 63 V E+ I ++ L G I +PGDKS++HRA+M S+AEG +TI L G DC T+ F+ Sbjct: 2 VNEQIID-ISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 Query: 64 MGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESI 123 +GV+I ++ D++ V G + + P VL GNSGTT RL++G+L+ S + GD SI Sbjct: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 Query: 124 AKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGL 183 KRPM RV PLK M ANI+G E+ +TPL I+ +K I Y VASAQVKSAIL A L Sbjct: 121 GKRPMDRVLRPLKSMNANIEGIEDN-YTPLIIKPSVIKGINYKMEVASAQVKSAILFASL 179 Query: 184 RAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKL--SGGQKLTATDIQVPGDVSSA 241 ++ T + E +SR+HTE M F + + EG ++ + + D VPGD+SSA Sbjct: 180 FSKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSA 239 Query: 242 AFFLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIE- 300 AFF+VA I P S + + NVG+NPTR+GIID++EKMG + GA EP A+I I+ Sbjct: 240 AFFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGA-EPTASIRIQY 298 Query: 301 TSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTK 360 T L+ I+I G+++P+ IDE+PVIAL TQA G + I+DA ELKVKETNRIDT L Sbjct: 299 TPMLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNL 358 Query: 361 LGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSY 420 LG ++ T+DG+II+ TV+S DHRIGMMLA+A L+ + I+ +AV VS+ Sbjct: 359 LGFELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSF 418 Query: 421 PTFFDELQKL 430 P F +L+ L Sbjct: 419 PGFLPKLKLL 428 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.315 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3539 Number of Sequences: 7 Number of extensions: 176 Number of successful extensions: 9 Number of sequences better than 1.0e-20: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 432 length of database: 2750 effective HSP length: 45 effective length of query: 387 effective length of database: 2435 effective search space: 942345 effective search space used: 942345 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 213 (86.7 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus halodurans C-125] (431 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltr... 782 0.0 gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] 518 e-150 gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltran... 510 e-148 gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltra... 332 8e-95 >gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus halodurans C-125] Length = 431 Score = 782 bits (2020), Expect = 0.0 Identities = 406/431 (94%), Positives = 406/431 (94%) Query: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK Sbjct: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 Query: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI Sbjct: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 Query: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL Sbjct: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 Query: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAF 240 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAF Sbjct: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAF 240 Query: 241 FLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSV 300 FLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSV Sbjct: 241 FLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSV 300 Query: 301 LQGVEIGGXXXXXXXXXXXXXAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 360 LQGVEIGG AVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA Sbjct: 301 LQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 360 Query: 361 SIHATDDGMIIEGPTPLKGGVTVSSHGDHRXXXXXXXXXXXXEKPVTVEGTEAIAVSYPS 420 SIHATDDGMIIEGPTPLKGGVTVSSHGDHR EKPVTVEGTEAIAVSYPS Sbjct: 361 SIHATDDGMIIEGPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPS 420 Query: 421 FFDHLDRLKSE 431 FFDHLDRLKSE Sbjct: 421 FFDHLDRLKSE 431 >gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] Length = 428 Score = 518 bits (1333), Expect = e-150 Identities = 268/419 (63%), Positives = 312/419 (74%) Query: 13 LKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQAEERV 72 L G I +PGDKSISHR+VMFGALA GTTTV+ FLPGADCLSTI CF+K+GV IEQ+ V Sbjct: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 Query: 73 TVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESIGKRPMKRVTEPL 132 + GKG D L+EP +LDVGNSGTT RL+LGIL+ PF+S + GDESI KRPMKRVTEPL Sbjct: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 Query: 133 KSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGLRAEGKTSVTEPA 192 K MGA+IDGR G TPLS+ G LKGID+ SPVASAQ+KSA+LLAGL+AEG T+VTEP Sbjct: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 Query: 193 KTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAFFLVAGAMVPHSR 252 K+RDHTERML AFGV + +D +VSI GGQ LT + VPGDISSAAFFL AGAMVP+SR Sbjct: 189 KSRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSR 248 Query: 253 ITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSVLQGVEIGGXXXX 312 I L NVG+NPTR GI++VL+ MGA L ++ G EP DL IETS L+ VEIGG Sbjct: 249 IVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIETSSLKAVEIGGDIIP 308 Query: 313 XXXXXXXXXAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIE 372 A+LATQA G TVIKDA ELKVKETNRIDTVVSEL KLGA I T DGM + Sbjct: 309 RLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGMKVY 368 Query: 373 GPTPLKGGVTVSSHGDHRXXXXXXXXXXXXEKPVTVEGTEAIAVSYPSFFDHLDRLKSE 431 G LKGG VSSHGDHR E+P+ +E T+AI VSYP+FF+HL++L + Sbjct: 369 GKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLSKK 427 >gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 432 Score = 510 bits (1313), Expect = e-148 Identities = 262/428 (61%), Positives = 321/428 (75%), Gaps = 1/428 (0%) Query: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 ++ +T+ P GL G I +PGDKSISHRAVMFG++A+G TT++GFL GADCLSTISCF++ Sbjct: 4 VKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKE 63 Query: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 +GV I Q + VTV GKG +GL+EP +LDVGNSGTT RL+ GIL+ PF S + GDESI Sbjct: 64 MGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESI 123 Query: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 KRPMKRVT PLK MGA IDGR+ G TPL+IRGG LK I++ SPVASAQ+KSAILLAGL Sbjct: 124 AKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGL 183 Query: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAF 240 RAEG T+VTEP +RDHTERMLEAFGV + ++G TV + GGQ LT + VPGD+SSAAF Sbjct: 184 RAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSSAAF 243 Query: 241 FLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIETSV 300 FLVAGA++P+S++ L NVG+NPTR GI++VL++MGAT +E EP A++TIETS Sbjct: 244 FLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIETSS 303 Query: 301 LQGVEIGGXXXXXXXXXXXXXAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 360 L+G+EIGG A+ ATQA G TVI+DA ELKVKETNRIDTVV+ELTKLGA Sbjct: 304 LKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTKLGA 363 Query: 361 SIHATDDGMIIEGPTPLKGGVTVSSHGDHRXXXXXXXXXXXXEKPVTVEGTEAIAVSYPS 420 I ATDDGMII G + LKG TV+S+GDHR E + +E EA+ VSYP+ Sbjct: 364 RIEATDDGMIIYGKSALKGN-TVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSYPT 422 Query: 421 FFDHLDRL 428 FFD L +L Sbjct: 423 FFDELQKL 430 >gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Staphylococcus aureus subsp. aureus MRSA252] Length = 432 Score = 332 bits (851), Expect = 8e-95 Identities = 191/434 (44%), Positives = 267/434 (61%), Gaps = 6/434 (1%) Query: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 M N+ +I + LKG I+VPGDKS++HRA+M +LA+G +T+ L G DC T+ F+ Sbjct: 1 MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 Query: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 LGV I++ E+++ V G+ + P +L GNSGTTTRL+ G+LS L SV+ GD SI Sbjct: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 Query: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 GKRPM RV PLKSM A I+G + N TPL I+ +KGI++ VASAQ+KSAIL A L Sbjct: 121 GKRPMDRVLRPLKSMNANIEGIE-DNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASL 179 Query: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSI--EGGQMLTGQHVVVPGDISSA 238 ++ T + E +R+HTE M F + IE +GL+++ E + + VPGDISSA Sbjct: 180 FSKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSA 239 Query: 239 AFFLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIE- 297 AFF+VA + P S +T+ NVGINPTR+GI++++++MG + + N+ G EP A + I+ Sbjct: 240 AFFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQ-TTGAEPTASIRIQY 298 Query: 298 TSVLQGVEIGGXXXXXXXXXXXXXAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTK 357 T +LQ ++I G A+L TQA G + IKDAEELKVKETNRIDT L Sbjct: 299 TPMLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNL 358 Query: 358 LGASIHATDDGMIIEGPTPLKGGVTVSSHGDHRXXXXXXXXXXXXEKPVTVEGTEAIAVS 417 LG + T+DG+II P+ K TV S DHR +PV ++ +A+ VS Sbjct: 359 LGFELQPTNDGLIIH-PSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVS 417 Query: 418 YPSFFDHLDRLKSE 431 +P F L L++E Sbjct: 418 FPGFLPKLKLLENE 431 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.314 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3470 Number of Sequences: 7 Number of extensions: 138 Number of successful extensions: 9 Number of sequences better than 1.0e-20: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 431 length of database: 2750 effective HSP length: 45 effective length of query: 386 effective length of database: 2435 effective search space: 939910 effective search space used: 939910 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 213 (86.7 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Staphylococcus aureus subsp. aureus MRSA252] (432 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltra... 839 0.0 gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltr... 374 e-107 gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] 358 e-103 gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltran... 353 e-101 >gi|49241782|emb|CAG40473.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Staphylococcus aureus subsp. aureus MRSA252] Length = 432 Score = 839 bits (2168), Expect = 0.0 Identities = 432/432 (100%), Positives = 432/432 (100%) Query: 1 MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL Sbjct: 1 MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 Query: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI Sbjct: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 Query: 121 GKRPMDRVLRPLKSMNANIEGIEDNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASLF 180 GKRPMDRVLRPLKSMNANIEGIEDNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASLF Sbjct: 121 GKRPMDRVLRPLKSMNANIEGIEDNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASLF 180 Query: 181 SKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSAA 240 SKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSAA Sbjct: 181 SKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSAA 240 Query: 241 FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP 300 FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP Sbjct: 241 FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP 300 Query: 301 MLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG 360 MLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG Sbjct: 301 MLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG 360 Query: 361 FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG 420 FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG Sbjct: 361 FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG 420 Query: 421 FLPKLKLLENEG 432 FLPKLKLLENEG Sbjct: 421 FLPKLKLLENEG 432 >gi|15614230|ref|NP_242533.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus halodurans C-125] Length = 431 Score = 374 bits (959), Expect = e-107 Identities = 204/434 (47%), Positives = 290/434 (66%), Gaps = 6/434 (1%) Query: 1 MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 M N+ +I + LKG I+VPGDKS++HRA+M +LA+G +T+ L G DC T+ F+ Sbjct: 1 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQK 60 Query: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 LGV I++ E+++ V G+ + P +L GNSGTTTRL+ G+LS L SV+ GD SI Sbjct: 61 LGVSIEQAEERVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESI 120 Query: 121 GKRPMDRVLRPLKSMNANIEGIE-DNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASL 179 GKRPM RV PLKSM A I+G + N TPL I+ +KGI++ VASAQ+KSAIL A L Sbjct: 121 GKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLAGL 180 Query: 180 FSKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSA 239 ++ T + E +R+HTE M F + IE +GL+++ E + + VPGDISSA Sbjct: 181 RAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSI--EGGQMLTGQHVVVPGDISSA 238 Query: 240 AFFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQ-TTGAEPTASIRIQY 298 AFF+VA + P S +T+ NVGINPTR+GI++++++MG + + N+ G EP A + I+ Sbjct: 239 AFFLVAGAMVPHSRITLTNVGINPTRAGILEVLKQMGATLAMENERVQGGEPVADLTIE- 297 Query: 299 TPMLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNL 358 T +LQ ++I G+++P+ IDE+P+IA+L TQA G + IKDAEELKVKETNRIDT L Sbjct: 298 TSVLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTK 357 Query: 359 LGFELQPTNDGLIIH-PSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVS 417 LG + T+DG+II P+ K TV S DHRIGM +A+A+LL+ +PV ++ +A+ VS Sbjct: 358 LGASIHATDDGMIIEGPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVS 417 Query: 418 FPGFLPKLKLLENE 431 +P F L L++E Sbjct: 418 YPSFFDHLDRLKSE 431 >gi|143816|gb|AAA20869.1| AroE [Bacillus subtilis] Length = 428 Score = 358 bits (920), Expect = e-103 Identities = 191/422 (45%), Positives = 273/422 (64%), Gaps = 6/422 (1%) Query: 13 LKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRLLGVDIKEDEDKL 72 L GEI +PGDKS++HR++M +LA G +T+ L G DC T+D FR +GV I++ + Sbjct: 9 LHGEIHIPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDV 68 Query: 73 VVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSIGKRPMDRVLRPL 132 V++ G A K P +L GNSGTT RL+ G+L+G S ++GD SI KRPM RV PL Sbjct: 69 VIHGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPL 128 Query: 133 KSMNANIEG-IEDNYTPLIIKPSVIKGINYKMEVASAQVKSAILFASLFSKEATIIKELD 191 K M A I+G +TPL + + +KGI+Y VASAQ+KSA+L A L ++ T + E Sbjct: 129 KKMGAKIDGRAGGEFTPLSVSGASLKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPH 188 Query: 192 VSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSAAFFIVAALITPG 251 SR+HTE M F + + + S++ + + AD VPGDISSAAFF+ A + P Sbjct: 189 KSRDHTERMLSAFGVKLSEDQTSVSI--AGGQKLTAADIFVPGDISSAAFFLAAGAMVPN 246 Query: 252 SDVTIHNVGINPTRSGIIDIVEKMGGNIQLF-NQTTGAEPTASIRIQYTPMLQPIKIEGE 310 S + + NVG+NPTR+GIID+++ MG +++ + +GAEP + I+ T L+ ++I G+ Sbjct: 247 SRIVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSADSGAEPYGDLIIE-TSSLKAVEIGGD 305 Query: 311 LVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLGFELQPTNDGL 370 ++P+ IDE+P+IALL TQA GT+ IKDA ELKVKETNRIDT L LG E++PT DG+ Sbjct: 306 IIPRLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTADGM 365 Query: 371 IIHPSE-FKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPGFLPKLKLLE 429 ++ + K A V S DHRIGMML +AS ++ EP++I+ DA++VS+P F L L Sbjct: 366 KVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLNKLS 425 Query: 430 NE 431 + Sbjct: 426 KK 427 >gi|74491472|gb|EAO54687.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 432 Score = 353 bits (905), Expect = e-101 Identities = 199/430 (46%), Positives = 273/430 (63%), Gaps = 6/430 (1%) Query: 2 VNEQIID-ISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL 60 V E+ I ++ L G I +PGDKS++HRA+M S+AEG +TI L G DC T+ F+ Sbjct: 4 VKERTIQPVNNGLNGNITIPGDKSISHRAVMFGSIAEGKTTIKGFLSGADCLSTISCFKE 63 Query: 61 LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI 120 +GV+I ++ D++ V G + + P VL GNSGTT RL++G+L+ S + GD SI Sbjct: 64 MGVEITQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESI 123 Query: 121 GKRPMDRVLRPLKSMNANIEGIEDN-YTPLIIKPSVIKGINYKMEVASAQVKSAILFASL 179 KRPM RV PLK M ANI+G E+ +TPL I+ +K I Y VASAQVKSAIL A L Sbjct: 124 AKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYISPVASAQVKSAILLAGL 183 Query: 180 FSKEATIIKELDVSRNHTETMFRHFNIPIEAEGLSITTIPEAIRYIKPADFHVPGDISSA 239 ++ T + E +SR+HTE M F + + EG ++ + + D VPGD+SSA Sbjct: 184 RAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKL--SGGQKLTATDIQVPGDVSSA 241 Query: 240 AFFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGA-EPTASIRIQY 298 AFF+VA I P S + + NVG+NPTR+GIID++EKMG + GA EP A+I I+ Sbjct: 242 AFFLVAGAIIPNSKLILQNVGMNPTRTGIIDVLEKMGATFTIEPINEGASEPAANITIE- 300 Query: 299 TPMLQPIKIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNL 358 T L+ I+I G+++P+ IDE+PVIAL TQA G + I+DA ELKVKETNRIDT L Sbjct: 301 TSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIRDAHELKVKETNRIDTVVAELTK 360 Query: 359 LGFELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSF 418 LG ++ T+DG+II+ TV+S DHRIGMMLA+A L+ + I+ +AV VS+ Sbjct: 361 LGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKIIIEDAEAVGVSY 420 Query: 419 PGFLPKLKLL 428 P F +L+ L Sbjct: 421 PTFFDELQKL 430 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.317 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3303 Number of Sequences: 7 Number of extensions: 135 Number of successful extensions: 16 Number of sequences better than 1.0e-20: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 432 length of database: 2750 effective HSP length: 45 effective length of query: 387 effective length of database: 2435 effective search space: 942345 effective search space used: 942345 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 213 (86.7 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] (371 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] 696 0.0 gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus h... 388 e-112 gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria me... 149 8e-40 >gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] Length = 371 Score = 696 bits (1797), Expect = 0.0 Identities = 354/371 (95%), Positives = 354/371 (95%) Query: 1 MNQMKDTXXXXXXXXXXXXXXXXXKKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFI 60 MNQMKDT KKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFI Sbjct: 1 MNQMKDTILLAGLGLIGGSIALAIKKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFI 60 Query: 61 SGVKEAATVIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQF 120 SGVKEAATVIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQF Sbjct: 61 SGVKEAATVIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQF 120 Query: 121 VGGHPMAGSHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPE 180 VGGHPMAGSHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPE Sbjct: 121 VGGHPMAGSHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPE 180 Query: 181 EHDGVTSVISHFPHIVAASLVHQTHHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDIL 240 EHDGVTSVISHFPHIVAASLVHQTHHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDIL Sbjct: 181 EHDGVTSVISHFPHIVAASLVHQTHHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDIL 240 Query: 241 LHNKDKILDRFDEWIREIDKIRTYVEQEDAENLFRYFKTAKDYRDGLPLRQKGAIPAFYD 300 LHNKDKILDRFDEWIREIDKIRTYVEQEDAENLFRYFKTAKDYRDGLPLRQKGAIPAFYD Sbjct: 241 LHNKDKILDRFDEWIREIDKIRTYVEQEDAENLFRYFKTAKDYRDGLPLRQKGAIPAFYD 300 Query: 301 LYVDVPDHPGVISEITAILAAERISITNIRIIETREDINGILRISFQSDDDRKRAEQCIE 360 LYVDVPDHPGVISEITAILAAERISITNIRIIETREDINGILRISFQSDDDRKRAEQCIE Sbjct: 301 LYVDVPDHPGVISEITAILAAERISITNIRIIETREDINGILRISFQSDDDRKRAEQCIE 360 Query: 361 ARAEYETFYAD 371 ARAEYETFYAD Sbjct: 361 ARAEYETFYAD 371 >gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus halodurans C-125] Length = 366 Score = 388 bits (997), Expect = e-112 Identities = 189/344 (54%), Positives = 259/344 (75%), Gaps = 2/344 (0%) Query: 25 KKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFISGVKEAATVIIATPVEQTLVMLEE 84 +K H K +IG D+++ Q AL LGVID+ A + G +A +++ATPV +T +L++ Sbjct: 23 RKEHDVK-MIGFDVNEHQVKMALSLGVIDEEASTMEEGASQADLIVLATPVARTTGILQQ 81 Query: 85 LAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQFVGGHPMAGSHKSGVAAAKEFLFEN 144 LA ++ + ++TDVGSTK+++++ A + F+GGHPMAGSHKSGV AA+ LFEN Sbjct: 82 LAKLPLKADAIVTDVGSTKKEIMEEAQFLEEKGITFIGGHPMAGSHKSGVEAARAHLFEN 141 Query: 145 AFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDGVTSVISHFPHIVAASLVHQT 204 AFYILTP ++ + + QL+N LKGT A F+EM+P++HD + ISHFPHIVAASLVHQ Sbjct: 142 AFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHDRLVGAISHFPHIVAASLVHQV 201 Query: 205 HHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDILLHNKDKILDRFDEWIREIDKIRTY 264 E+ P+V R AAGGFRDITRIAS SP MWRDILLHNKD +L + W RE++ ++ Sbjct: 202 AKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHNKDSLLQLLETWEREMEFVKQV 261 Query: 265 VEQEDAENLFRYFKTAKDYRDGLPLRQKGAIPAFYDLYVDVPDHPGVISEITAILAAERI 324 +E+ED E + +YF AK +RDGLP+ +KGAIP+FYDLYVDVPDHPGVIS++T ILA E+I Sbjct: 262 IEEEDEEKILQYFHEAKVFRDGLPIHKKGAIPSFYDLYVDVPDHPGVISDVTRILANEKI 321 Query: 325 SITNIRIIETREDINGILRISFQSDDDRKRAEQCIEARAEYETF 368 SITNIRI+ETREDI G+LR+SF+S++DR++A++ ++A YET+ Sbjct: 322 SITNIRILETREDIMGVLRLSFRSEEDREQAKRVLQAEM-YETY 364 >gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria meningitidis Z2491] Length = 290 Score = 149 bits (376), Expect = 8e-40 Identities = 97/258 (37%), Positives = 136/258 (52%), Gaps = 6/258 (2%) Query: 31 KRIIGIDISDEQAVAALKLGVIDDRADSFISG--VKEAATVIIATPVEQTLVMLEELAHS 88 + + GID + AL+ GVID RA I + A V+IATPV +L L Sbjct: 30 RTVTGIDTDRDNLERALERGVID-RASVAIDADSIGGADLVLIATPVATVPAILTALRPV 88 Query: 89 GIEHELLITDVGSTKQKVVDYADQVLPSR-YQFVGGHPMAGSHKSGVAAAKEFLFENAFY 147 EH I+DVGSTK V++ + LP R ++ + HP+AGS +SG AA+ LF + Sbjct: 89 LPEHTW-ISDVGSTKSSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKL 147 Query: 148 ILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDGVTSVISHFPHIVAASLVHQTHHS 207 I+TP + ++NL A M + HD V + +SH PH+ A + VHQ Sbjct: 148 IITPHGGEHSDGIALIENLWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDH 207 Query: 208 ENLYPLVKRFAAGGFRDITRIASSSPAMWRDILLHNKDKILDRFDEWIREIDKIRTYVEQ 267 + +K FAA GFRD TRIAS PA+W DI L NKD +L +++D + + Sbjct: 208 PDGQEYLK-FAATGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLADILTA 266 Query: 268 EDAENLFRYFKTAKDYRD 285 +D E L+RYF+ AK RD Sbjct: 267 DDREALYRYFEEAKTTRD 284 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2416 Number of Sequences: 7 Number of extensions: 88 Number of successful extensions: 6 Number of sequences better than 1.0e-20: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 3 length of query: 371 length of database: 2750 effective HSP length: 43 effective length of query: 328 effective length of database: 2449 effective search space: 803272 effective search space used: 803272 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 212 (86.3 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus halodurans C-125] (366 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus h... 682 0.0 gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] 388 e-112 gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria me... 155 9e-42 >gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus halodurans C-125] Length = 366 Score = 682 bits (1759), Expect = 0.0 Identities = 351/366 (95%), Positives = 351/366 (95%) Query: 1 MAERTVFXXXXXXXXXXXXXXXRKEHDVKMIGFDVNEHQVKMALSLGVIDEEASTMEEGA 60 MAERTVF RKEHDVKMIGFDVNEHQVKMALSLGVIDEEASTMEEGA Sbjct: 1 MAERTVFIIGLGLIGGSIALAIRKEHDVKMIGFDVNEHQVKMALSLGVIDEEASTMEEGA 60 Query: 61 SQADLIVLATPVARTTGILQQLAKLPLKADAIVTDVGSTKKEIMEEAQFLEEKGITFIGG 120 SQADLIVLATPVARTTGILQQLAKLPLKADAIVTDVGSTKKEIMEEAQFLEEKGITFIGG Sbjct: 61 SQADLIVLATPVARTTGILQQLAKLPLKADAIVTDVGSTKKEIMEEAQFLEEKGITFIGG 120 Query: 121 HPMAGSHKSGVEAARAHLFENAFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHD 180 HPMAGSHKSGVEAARAHLFENAFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHD Sbjct: 121 HPMAGSHKSGVEAARAHLFENAFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHD 180 Query: 181 RLVGAISHFPHIVAASLVHQVAKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHN 240 RLVGAISHFPHIVAASLVHQVAKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHN Sbjct: 181 RLVGAISHFPHIVAASLVHQVAKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHN 240 Query: 241 KDSLLQLLETWEREMEFVKQVIEEEDEEKILQYFHEAKVFRDGLPIHKKGAIPSFYDLYV 300 KDSLLQLLETWEREMEFVKQVIEEEDEEKILQYFHEAKVFRDGLPIHKKGAIPSFYDLYV Sbjct: 241 KDSLLQLLETWEREMEFVKQVIEEEDEEKILQYFHEAKVFRDGLPIHKKGAIPSFYDLYV 300 Query: 301 DVPDHPGVISDVTRILANEKISITNIRILETREDIMGVLRLSFRSEEDREQAKRVLQAEM 360 DVPDHPGVISDVTRILANEKISITNIRILETREDIMGVLRLSFRSEEDREQAKRVLQAEM Sbjct: 301 DVPDHPGVISDVTRILANEKISITNIRILETREDIMGVLRLSFRSEEDREQAKRVLQAEM 360 Query: 361 YETYLM 366 YETYLM Sbjct: 361 YETYLM 366 >gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] Length = 371 Score = 388 bits (997), Expect = e-112 Identities = 189/344 (54%), Positives = 259/344 (75%), Gaps = 2/344 (0%) Query: 23 RKEHDVK-MIGFDVNEHQVKMALSLGVIDEEASTMEEGASQADLIVLATPVARTTGILQQ 81 +K H K +IG D+++ Q AL LGVID+ A + G +A +++ATPV +T +L++ Sbjct: 25 KKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFISGVKEAATVIIATPVEQTLVMLEE 84 Query: 82 LAKLPLKADAIVTDVGSTKKEIMEEAQFLEEKGITFIGGHPMAGSHKSGVEAARAHLFEN 141 LA ++ + ++TDVGSTK+++++ A + F+GGHPMAGSHKSGV AA+ LFEN Sbjct: 85 LAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQFVGGHPMAGSHKSGVAAAKEFLFEN 144 Query: 142 AFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHDRLVGAISHFPHIVAASLVHQV 201 AFYILTP ++ + + QL+N LKGT A F+EM+P++HD + ISHFPHIVAASLVHQ Sbjct: 145 AFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDGVTSVISHFPHIVAASLVHQT 204 Query: 202 AKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHNKDSLLQLLETWEREMEFVKQV 261 E+ P+V R AAGGFRDITRIAS SP MWRDILLHNKD +L + W RE++ ++ Sbjct: 205 HHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDILLHNKDKILDRFDEWIREIDKIRTY 264 Query: 262 IEEEDEEKILQYFHEAKVFRDGLPIHKKGAIPSFYDLYVDVPDHPGVISDVTRILANEKI 321 +E+ED E + +YF AK +RDGLP+ +KGAIP+FYDLYVDVPDHPGVIS++T ILA E+I Sbjct: 265 VEQEDAENLFRYFKTAKDYRDGLPLRQKGAIPAFYDLYVDVPDHPGVISEITAILAAERI 324 Query: 322 SITNIRILETREDIMGVLRLSFRSEEDREQAKRVLQAEM-YETY 364 SITNIRI+ETREDI G+LR+SF+S++DR++A++ ++A YET+ Sbjct: 325 SITNIRIIETREDINGILRISFQSDDDRKRAEQCIEARAEYETF 368 >gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria meningitidis Z2491] Length = 290 Score = 155 bits (393), Expect = 9e-42 Identities = 92/253 (36%), Positives = 140/253 (55%), Gaps = 4/253 (1%) Query: 32 GFDVNEHQVKMALSLGVIDEEASTME-EGASQADLIVLATPVARTTGILQQLAKLPLKAD 90 G D + ++ AL GVID + ++ + ADL+++ATPVA IL L + L Sbjct: 34 GIDTDRDNLERALERGVIDRASVAIDADSIGGADLVLIATPVATVPAILTALRPV-LPEH 92 Query: 91 AIVTDVGSTKKEIMEE-AQFLEEKGITFIGGHPMAGSHKSGVEAARAHLFENAFYILTPS 149 ++DVGSTK ++E + L ++ I HP+AGS +SG +AA+ LF + I+TP Sbjct: 93 TWISDVGSTKSSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPH 152 Query: 150 KELTVKPIIQLQNWLKGTKAKFIEMTPDQHDRLVGAISHFPHIVAASLVHQVAKIESEDP 209 I ++N A+ M +HD + A+SH PH+ A + VHQ+ + Sbjct: 153 GGEHSDGIALIENLWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILD-HPDGQ 211 Query: 210 MVSRLAAGGFRDITRIASGSPIMWRDILLHNKDSLLQLLETWEREMEFVKQVIEEEDEEK 269 + AA GFRD TRIASG P +W DI L NKDSLLQL++ ++++ + ++ +D E Sbjct: 212 EYLKFAATGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLADILTADDREA 271 Query: 270 ILQYFHEAKVFRD 282 + +YF EAK RD Sbjct: 272 LYRYFEEAKTTRD 284 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.319 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2413 Number of Sequences: 7 Number of extensions: 95 Number of successful extensions: 6 Number of sequences better than 1.0e-20: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 3 length of query: 366 length of database: 2750 effective HSP length: 43 effective length of query: 323 effective length of database: 2449 effective search space: 791027 effective search space used: 791027 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 212 (86.3 bits) BLASTP 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria meningitidis Z2491] (290 letters) Database: bsub1.fasta 7 sequences; 2750 total letters Searching.......done Score E Sequences producing significant alignments: (bits) Value gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria me... 549 e-160 gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus h... 158 1e-42 gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] 158 1e-42 >gi|7380673|emb|CAB85263.1| putative oxidoreductase [Neisseria meningitidis Z2491] Length = 290 Score = 549 bits (1415), Expect = e-160 Identities = 275/290 (94%), Positives = 275/290 (94%) Query: 1 MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLERALERGVIDRASVAIDA 60 MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLERALERGVIDRASVAIDA Sbjct: 1 MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLERALERGVIDRASVAIDA 60 Query: 61 DSIGGADLVLIATPVATVPAILTALRPVLPEHTWISDVGSTKSSVIEAFRRCLPDRLHRC 120 DSIGGADLVLIATPVATVPAILTALRPVLPEHTWISDVGSTKSSVIEAFRRCLPDRLHRC Sbjct: 61 DSIGGADLVLIATPVATVPAILTALRPVLPEHTWISDVGSTKSSVIEAFRRCLPDRLHRC 120 Query: 121 IAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGIALIENLWHAVGAEIYTMDAQ 180 IAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGIALIENLWHAVGAEIYTMDAQ Sbjct: 121 IAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGIALIENLWHAVGAEIYTMDAQ 180 Query: 181 RHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAATGFRDFTRIASGHPAVWADICL 240 RHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAATGFRDFTRIASGHPAVWADICL Sbjct: 181 RHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAATGFRDFTRIASGHPAVWADICL 240 Query: 241 ANKDSXXXXXXXXXXXXXXXADILTADDREALYRYFEEAKTTRDRWLDGN 290 ANKDS ADILTADDREALYRYFEEAKTTRDRWLDGN Sbjct: 241 ANKDSLLQLVQGLGKQLDVLADILTADDREALYRYFEEAKTTRDRWLDGN 290 >gi|10174283|dbj|BAB05385.1| prephenate dehydrogenase [Bacillus halodurans C-125] Length = 366 Score = 158 bits (400), Expect = 1e-42 Identities = 98/280 (35%), Positives = 148/280 (52%), Gaps = 5/280 (1%) Query: 7 IALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLERALERGVIDRASVAIDADSIGGA 66 + +IG+GLIGGS L ++++ V+ + G D + ++ AL GVID + ++ + A Sbjct: 6 VFIIGLGLIGGSIALAIRKEHDVKMI-GFDVNEHQVKMALSLGVIDEEASTME-EGASQA 63 Query: 67 DLVLIATPVATVPAILTALRPV-LPEHTWISDVGSTKSSVIEAFRRCLPDRLHRCIAAHP 125 DL+++ATPVA IL L + L ++DVGSTK ++E + L ++ I HP Sbjct: 64 DLIVLATPVARTTGILQQLAKLPLKADAIVTDVGSTKKEIMEE-AQFLEEKGITFIGGHP 122 Query: 126 IAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGIALIENLWHAVGAEIYTMDAQRHDAV 185 +AGS +SG +AA+ LF + I+TP I ++N A+ M +HD + Sbjct: 123 MAGSHKSGVEAARAHLFENAFYILTPSKELTVKPIIQLQNWLKGTKAKFIEMTPDQHDRL 182 Query: 186 FAAVSHMPHLTAFAYVHQILD-HPDGQEYLKFAATGFRDFTRIASGHPAVWADICLANKD 244 A+SH PH+ A + VHQ+ + + AA GFRD TRIASG P +W DI L NKD Sbjct: 183 VGAISHFPHIVAASLVHQVAKIESEDPMVSRLAAGGFRDITRIASGSPIMWRDILLHNKD 242 Query: 245 SXXXXXXXXXXXXXXXADILTADDREALYRYFEEAKTTRD 284 S ++ +D E + +YF EAK RD Sbjct: 243 SLLQLLETWEREMEFVKQVIEEEDEEKILQYFHEAKVFRD 282 >gi|143815|gb|AAA20868.1| TyrA [Bacillus subtilis] Length = 371 Score = 158 bits (400), Expect = 1e-42 Identities = 107/282 (37%), Positives = 144/282 (51%), Gaps = 8/282 (2%) Query: 7 IALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLERALERGVID-RASVAIDADSIGG 65 I L G+GLIGGS L +K+ + + GID + AL+ GVID RA I + Sbjct: 8 ILLAGLGLIGGSIALAIKKNHPGKRIIGIDISDEQAVAALKLGVIDDRADSFISG--VKE 65 Query: 66 ADLVLIATPVATVPAILTALRPVLPEHTW-ISDVGSTKSSVIEAFRRCLPDRLHRCIAAH 124 A V+IATPV +L L EH I+DVGSTK V++ + LP R ++ + H Sbjct: 66 AATVIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSR-YQFVGGH 124 Query: 125 PIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGIALIENLWHAVGAEIYTMDAQRHDA 184 P+AGS +SG AA+ LF + I+TP + ++NL A M + HD Sbjct: 125 PMAGSHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDG 184 Query: 185 VFAAVSHMPHLTAFAYVHQILDHPDGQEYL--KFAATGFRDFTRIASGHPAVWADICLAN 242 V + +SH PH+ A + VHQ H + L +FAA GFRD TRIAS PA+W DI L N Sbjct: 185 VTSVISHFPHIVAASLVHQ-THHSENLYPLVKRFAAGGFRDITRIASSSPAMWRDILLHN 243 Query: 243 KDSXXXXXXXXXXXXXXXADILTADDREALYRYFEEAKTTRD 284 KD + +D E L+RYF+ AK RD Sbjct: 244 KDKILDRFDEWIREIDKIRTYVEQEDAENLFRYFKTAKDYRD 285 Database: bsub1.fasta Posted date: Jan 1, 2006 8:45 PM Number of letters in database: 2750 Number of sequences in database: 7 Lambda K H 0.323 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1941 Number of Sequences: 7 Number of extensions: 90 Number of successful extensions: 12 Number of sequences better than 1.0e-20: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 3 length of query: 290 length of database: 2750 effective HSP length: 42 effective length of query: 248 effective length of database: 2456 effective search space: 609088 effective search space used: 609088 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 211 (85.9 bits)