BASE 1.2.16 Global Variables

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The table lists all variables declared as global in functions. If a global variable is accessed through the $GLOBALS super-variable, then it is also listed that way.

Variable Initialized in Comments
$allwells Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$anchor Used in the following files:
$anncolor Used in the following files:
  • gene_explore.phtml
$annotCols Used in the following files:
  • job_plotexps.phtml
$assayids Used in the following files:
  • gene_export.phtml
$barcodes Used in the following files:
  • plate_mapping.phtml
$BC The global BaseControl object. Used in the following files:
  • arraytype_repmap.phtml
  • basefile_replist.inc.php
  • experiment.inc.php
  • experiment_common.inc.php
  • export_mev.inc.php
  • ftpd.inc.php
  • hyb.inc.php
  • imagene_join.phtml
  • item.inc.php
  • job.inc.php
  • jobController.php
  • jobManager.php
  • labeled.inc.php
  • newinit.inc.php
  • plate_mapping.phtml
  • plate_upload.phtml
  • printmap.inc.php
  • protocol.inc.php
  • reporterlist_common.inc.php
  • reporter_update.phtml
  • result_common.inc.php
  • spotimage.inc.php
  • startBase.php
  • stopBase.php
  • upload_common.inc.php
  • user.inc.php
$bfr Used in the following files:
  • job_plotexps.phtml
$cbId Used in the following files:
  • gene_common.inc.php
  • gene_explore.phtml
$cbName Used in the following files:
  • gene_explore.phtml
$GLOBALS["cbNumRow"] Used in the following files:
  • gene_explore.phtml
$cbRaw Used in the following files:
  • gene_common.inc.php
  • raw_table.phtml
$cbRaws Used in the following files:
  • assay_table.phtml
$cellpad
$GLOBALS["cellpad"] 		Used in the following files:
  • array_common.inc.php
  • dataset_import.phtml
  • experiment_common.inc.php
  • gene_common.inc.php
  • htmlinit.inc.php
  • plotter.inc.php
  • reporterlist_common.inc.php
  • reporterlist_edit.phtml
  • searchhtml.inc.php
  • spotinfo,phtml
  • user_common.inc.php
$columns Used in the following files:
  • job_plotexps.phtml
$coltypes Used in the following files:
  • reporter_list.phtml
$config An array that contains configuration parameters. Used in the following files:
$GLOBALS["config"]["RDBMS"] Used in the following files:
  • bioassayl.inc.php
$curDisplay Used in the following files:
  • array_common.inc.php
  • experiment_common.inc.php
  • htmlinit.inc.php
  • user_common.inc.php
$curSession Used in the following files:
$curUser
$GLOBALS["curUser"] 		Used in the following files:
  • hyb_common.inc.php
  • imagene_join.phtml
  • misc.inc.php
  • newinit.inc.php
  • plate_mapping.phtml
  • plate_upload.phtml
  • plotter.inc.php
  • result_common.inc.php
  • spotinfo.phtml
  • user_common.inc.php
$datalines Used in the following files:
  • arraytype_repmap.phtml
  • plate_mapping.phtml
  • plate_upload.phtml
$dates Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$GLOBALS["debuglevel"] Used in the following files:
  • pluginTool.php
$eventTypes Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$examine Used in the following files:
  • plate_upload.phtml
$fCount Used in the following files:
  • gene_export.phtml
$format Used in the following files:
  • job_plotexps.phtml
$gDFPdata Used in the following files:
  • bioassay.inc.php
  • bioassayset.inc.php
  • experiment.inc.php
  • raw.inc.php
$gnametemp Used in the following files:
  • clust_ps.phtml
$gsttemp Used in the following files:
  • clust_image.phtml
$height Used in the following files:
  • job_plotexps.phtml
$helpS Used in the following files:
$hr Used in the following files:
  • result_common.inc.php
$hrStats
$GLOBALS["hrStats"] 		Used in the following files:
  • result_common.inc.php
$inputname Used in the following files:
  • pluginTool.php
$idprefix Used in the following files:
  • reporter_update.phtml
$i_addeddate Used in the following files:
$i_addslides Used in the following files:
  • array_common.inc.php
$i_adescr Used in the following files:
  • array_common.inc.php
$i_annot Used in the following files:
  • plotter.inc.php
$i_array Used in the following files:
  • hyb_common.inc.php
$i_atype Used in the following files:
  • result_common.inc.php
$i_ba Used in the following files:
  • experiment_common.inc.php
$i_barcode Used in the following files:
  • array_common.inc.php
  • plate_upload.phtml
$i_chooseat Used in the following files:
  • result_common.inc.php
$i_delete Used in the following files:
$i_deleteimg Used in the following files:
  • hyb_common.inc.php
$i_delmarked Used in the following files:
$i_destr Used in the following files:
  • array_common.inc.php
$i_destroygo Used in the following files:
  • array_common.inc.php
$i_destroyhow Used in the following files:
  • array_common.inc.php
$i_expgo Used in the following files:
  • raw_common.inc.php
$i_exphow Used in the following files:
  • raw_common.inc.php
$i_expwhich Used in the following files:
  • raw_common.inc.php
$i_filedel Used in the following files:
  • dataset_import.phtml
$i_fmt Used in the following files:
  • plotter.inc.php
$genes Used in the following files:
  • gene_export.phtml
$i_barcode Used in the following files:
  • plate_mapping.phtml
$i_gid Used in the following files:
$i_groupaccess Used in the following files:
$i_grpgo Used in the following files:
  • user_common.inc.php
$i_grphow Used in the following files:
  • user_common.inc.php
$i_grpwhich Used in the following files:
  • user_common.inc.php
$i_histres Used in the following files:
  • plotter.inc.php
$i_imgjpeg Used in the following files:
  • hyb_common.inc.php
$i_jobdir Used in the following files:
  • experiment_common.inc.php
$i_login Used in the following files:
$i_logout Used in the following files:
$i_owner Used in the following files:
$i_password Used in the following files:
$i_plotsize Used in the following files:
  • plotter.inc.php
$i_plotx Used in the following files:
  • plotter.inc.php
$i_ploty Used in the following files:
  • plotter.inc.php
$i_pname Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$i_posmode Used in the following files:
  • result_common.inc.php
$GLOBALS["i_replistdel"] Used in the following files:
  • experiment_common.inc.php
$i_replistexp Used in the following files:
  • reporterlist_common.inc.php
$i_replistname Used in the following files:
  • reporterlist_common.inc.php
$GLOBALS["i_restartjob"] Used in the following files:
  • experiment_common.inc.php
$i_rounda Used in the following files:
  • plotter.inc.php
$i_servgo Used in the following files:
  • program_list.phtml
$i_servhow Used in the following files:
  • program_list.phtml
$i_servwhich Used in the following files:
  • program_list.phtml
$i_setdescr Used in the following files:
  • experiment_common.inc.php
$i_setedit Used in the following files:
  • experiment_common.inc.php
$i_setname Used in the following files:
  • experiment_common.inc.php
$i_setupdate Used in the following files:
  • experiment_common.inc.php
$i_sh Used in the following files:
  • array_common.inc.php
  • item_common.inc.php
  • program_list.phtml
  • raw_common.inc.php
  • user_common.inc.php
$i_shgacc Used in the following files:
$i_shgo Used in the following files:
$i_showdel Used in the following files:
$i_shgrp Used in the following files:
$i_shuser Used in the following files:
$i_shwacc Used in the following files:
$i_trancollapse Used in the following files:
  • experiment_common.inc.php
$i_trandescr Used in the following files:
  • experiment_common.inc.php
$i_tranexpand Used in the following files:
  • experiment_common.inc.php
$i_tranname Used in the following files:
  • experiment_common.inc.php
$i_un Used in the following files:
$i_undelmarked Used in the following files:
$i_view Used in the following files:
  • job_plotexps.phtml
  • plotter.inc.php
$i_wiz Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$i_worldaccess Used in the following files:
$jf Used in the following files:
  • job_plotexps.phtml
$job Used in the following files:
  • clust_index.phtml
  • job_plotexps.phtml
$jobname Used in the following files:
  • job_plotexps.phtml
$lastline Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$location
$GLOBALS["location"] 		Used in the following files:
$maxc Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$maxr Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$maxwells Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$GLOBALS["mevSetId"] Used in the following files:
  • export_mev.inc.php
$newreporters Used in the following files:
  • arraytype_repmap.phtml
$nonewrep Used in the following files:
  • arraytype_repmap.phtml
  • plate_upload.phtml
$num_cols1 Used in the following files:
  • imagene_join.phtml
$num_cols2 Used in the following files:
  • imagene_join.phtml
$oldlocation Used in the following files:
$options Used in the following files:
  • pluginTool.php
$options["verbose"]
$GLOBALS["options"]["verbose"] 		Used in the following files:
  • jobManager.php
$pdftempfile Used in the following files:
  • clust_ps.phtml
$GLOBALS["PHP_SELF"] Used in the following files:
$plateAutoName Used in the following files:
  • plate_upload.phtml
$platecache Used in the following files:
  • plate_mapping.phtml
$plateids Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$plateparents Used in the following files:
  • plate_mapping.phtml
$platewells Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$plotAnnot Used in the following files:
  • job_plotexps.phtml
$plotSize Used in the following files:
  • job_plotexps.phtml
$plotTempfile Used in the following files:
  • array_plot.phtml
  • plotter.inc.php
$plotx Used in the following files:
  • job_plotexps.phtml
$ploty Used in the following files:
  • job_plotexps.phtml
$protos Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$psFile Used in the following files:
  • store_tmp.phtml
$ptype Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$ptypeid Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$raw Used in the following files:
  • raw_table.phtml
$REMOTE_ADDR Used in the following files:
$repMapFeatures Used in the following files:
  • arraytype_repmap.phtml
$repMapPrefix Used in the following files:
  • arraytype_repmap.phtml
$reporters Used in the following files:
  • arraytype_repmap.phtml
  • plate_mapping.phtml
  • plate_upload.phtml
  • reporter_update.phtml
$repprefix Used in the following files:
  • plate_upload.phtml
$savemode Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$SBFCassayids
$GLOBALS["SBFCassayids"] 		Used in the following files:
  • basefile_spots.inc.php
$SBFCfCount
$GLOBALS["SBFCfCount"] 		Used in the following files:
  • basefile_spots.inc.php
$SBFCfd
$GLOBALS["SBFCfd"] 		Used in the following files:
  • basefile_spots.inc.php
$SBFCgenes
$GLOBALS["SBFCgenes"] 		Used in the following files:
  • basefile_spots.inc.php
$SBFCtcb
$GLOBALS["SBFCtcb"] 		Used in the following files:
  • basefile_spots.inc.php
$GLOBALS["screencols"] Used in the following files:
  • pluginTool.php
$showdel Used in the following files:
$spotSizeFactor Used in the following files:
  • gene_explore.phtml
$stats Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
  • reporter_update.phtml
$tdbg
$GLOBALS["tdbg"] 		htmlinit.inc.php An array containing three HTML color specifications for table data background colors. Used in the following files:
  • array_common.inc.php
  • experiment_common.inc.php
  • gene_common.inc.php
  • gene_explore.phtml
  • htmlinit.inc.php
  • hyb_common.inc.php
  • probe_common.inc.php
  • raw_common.inc.php
  • reporterlist_edit.phtml
  • user_common.inc.php
$tdbg2
$GLOBALS["tdbg2"] 		htmlinit.inc.php An array containing three HTML color specifications for table data background colors. Used in the following files:
$tissueid Used in the following files:
  • sampletissue_tree.phtml
$tm4mevChannels
$GLOBALS["tm4mevChannels"] 		Used in the following files:
  • export_mev.inc.php
$tm4mevFd
$GLOBALS["tm4mevFd"] 		Used in the following files:
  • export_mev.inc.php
$tmpFile Used in the following files:
  • store_tmp.phtml
$tran Used in the following files:
  • clust_index.phtml
$updcol Used in the following files:
  • reporter_update.phtml
$updcolnames Used in the following files:
  • reporter_update.phtml
$upl Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml
$GLOBALS["verbosity"] Used in the following files:
  • pluginTool.php
$GLOBALS["wekaAssay"] Used in the following files:
  • export_weka.inc.php
$width Used in the following files:
  • job_plotexps.phtml
$wiz Used in the following files:
  • plate_mapping.phtml
  • plate_upload.phtml

Updated 29-Aug-2005.